papers

  1. Michelot T, Langrock R, Bestley S, Jonsen I, Photopoulou T, Patterson TA (2016) Estimation and simulation of foraging trips in land-based marine predators. In Review arXiv:1610.06953v1

  2. Auger-Methe M, Albertsen C, Jonsen I, Derocher A, Lidgard D, Studholme K, Bowen WD, Crossin G, Mills Flemming J (2016) Spatiotemporal modelling of animal behaviour using Template Model Builder. Marine Ecology Progress Series Accepted 15 Dec 2016

  3. Bestley S, Jonsen ID, Hindell MA, Harcourt RG, Gales NJ (2016) Putting the behaviour into animal movement modelling: improved activity budgets from use of ancillary tag information. Ecology & Evolution 6:8243-8255

  4. Auger-Methe M, Field C, Albertsen C, Derocher A, Lewis M, Jonsen I, Mills Flemming J (2016) State-space models' dirty little secrets: even simple linear Gaussian models can have estimation problems. Scientific Reports 6:26677

  5. Hays GC, ... Jonsen I, et al (2016) Key questions in marine megafauna movement ecology. Trends in Ecology and Evolution 31:463-475

  6. Carroll G, Everett JD, Harcourt R, Slip D, Jonsen ID (2016) High sea surface temperatures driven by a strengthening current reduce foraging success by penguins. Scientific Reports 6:22236

  7. Jonsen I (2016) Joint estimation over multiple individuals improves behavioural state inference from animal movement data. Scientific Reports 6:20625

  8. Pirotta V, Slip D, Jonsen ID, Peddemors VM, Cato DH, Ross G, Harcourt R (2016) Migrating humpback whales show no detectable response to whale alarms off Sydney, Australia. Endangered Species Research 29:201-209

  9. Gutowsky SE, Leonard ML, Conners MG, Shaffer SA, Jonsen ID (2015) Individual-level variation and higher-level interpretations of space use in wide-ranging spacies: An albatross case study of sampling effects. Frontiers in Marine Science - Marine Megafauna 2:93 doi:10.3389/fmars.2015.00093

  10. Wilson SG, Jonsen ID, Schallert RJ, Ganong JE, Castleton MR, Spares AD, Boustany AM, Stokesbury MJW, Block BA (2015) Tracking the fidelity of Atlantic Bluefin tuna released in Canadian waters to the Gulf of Mexico spawning grounds. Canadian Journal of Fisheries and Aquatic Sciences 72:1700-1717

  11. Baker LL, Mills Flemming JE, Jonsen ID, Lidgard DC, Iverson SJ, Bowen WD (2015) A novel approach to quantifying the spatiotemporal behavior of instrumented grey seals used to sample the environment. Movement Ecology 3:20 doi:10.1186/s40462-015-0047-4

  12. Arthur B, Hindell M, Bester M, Trathan P, Jonsen I, Staniland I, Oosthuizen WC, Wege M, Lea M-A (2015) Return customers: foraging site fidelity and the effect of environmental variability in wide-ranging Antarctic fur seals. PLoS One 10(3): e0120888

  13. Bestley S, Jonsen ID, Hindell MA, Harcourt RG, Gales NJ (2015) Taking animal tracking to new depths: synthesizing horizontal-vertical movement relationships for four marine predators. Ecology 96:417-427

  14. Gutowsky SE, Gutowsky LFG, Jonsen ID, Leonard ML, Naughton MB, Romano MD, Shaffer SA (2014) Daily activity budgets reveal a quasi-flightless stage during non-breeding in Hawaiian albatrosses. Movement Ecology 2:23

  15. Carroll G, Slip D, Jonsen I, Harcourt R (2014) Supervised accelerometry analysis can identify prey capture by penguins at sea. Journal of Experimental Biology 217:4295-4302

  16. Lidgard DC, Bowen WD, Jonsen ID, McConnell BJ, Lovell P, Webber DM, Stone T, Iverson SJ (2014) Transmitting species-interaction data from animal-borne transceivers through Service Argos using Bluetooth communication. Methods in Ecology and Evolution 5:864-871

  17. Martins EG, Gutowsky LFG, Harrison PM, Mills Flemming JE, Jonsen ID, Zhu DZ, Leake A, Patterson DA, Power M, Cooke SJ (2014) Behavioural attributes of turbine entrainment risk for adult resident fish revealed by acoustic telemetry and state-space modeling. Animal Biotelemetry 2:13

  18. Pollet I, Ronconi R, Jonsen ID, Leonard M, Taylor PD, Shutler D (2014) Foraging movements of Leach's storm-petrels, Oceanodroma leucorhoa, during incubation. Journal of Avian Biology 45:305-314

  19. Baker LL, Jonsen ID, Mills Flemming JE, Lidgard DC, Bowen WD, Iverson SJ, Webber DM (2014) Probability of detecting marine predator-prey and species interactions using acoustic transmitter-receiver tags. PLoS ONE 9(6): e98117

  20. Lidgard DC, Bowen WD, Jonsen ID, Iverson SJ (2014) Predator-borne acoustic transceivers and GPS tracking reveal spatiotemporal patterns of encounters with acoustically tagged fish in the open ocean. Marine Ecology Progress Series 501:157-168

  21. Silva MA, Jonsen ID, Russell DJF, Preito R, Thompson D, Baumgartner MF (2014) Assessing performance of Bayesian state-space models fit to Argos satellite telemetry locations processed with Kalman filtering. PLoS ONE 9(3): e92277

  22. Wong MK, Abidi SSR, Jonsen ID (2014) A multi-phase correlation search framework for mining non-taxonomic relations from unstructured text. Knowledge and Information Systems 38:641-667

  23. Silva MA, Prieto R, Jonsen ID, Baumgartner MF, Santos RS (2013) North Atlantic blue and fin whales suspend their spring migration to forage in middle latitudes: building up energy reserves for the journey? PLoS ONE 8(10): e76507

  24. Whitehead H, Jonsen ID (2013) Inferring animal densities from tracking data using Markov chains. PLoS ONE 8(4): e60901

  25. Jonsen ID, Basson M, Bestley S, Bravington M, Patterson TA, Pederson M, Thomson R, Thygesen U, Wotherspoon S (2013) State-space models for biologgers: a methodological road map. Deep Sea Research II 88-89:34-46  suppl

  26. Bestley S, Jonsen ID, Hindell MA, Guinet C, Charrassin J-B (2013) Integrative modelling of animal movement: incorporating in situ habitat and behavioural information for a migratory marine predator. Proceedings of the Royal Society B 280: 20122262

  27. Hazen EL, Jorgensen S, Rykaczewski RR, Bograd SJ, Foley DG, Jonsen ID, Shaffer SA, Dunne JP, Costa DP, Crowder LB, Block BA (2013) Predicted habitat shifts of Pacific top predators in a changing climate. Nature Climate Change DOI: 10.1038/nclimate1686

  28. Swain DP, Jonsen ID, Simon JE, Davies TD (2012) Decadal mortality trends of skate populations in Atlantic Canada. Canadian Journal of Fisheries and Aquatic Sciences DOI: 10.1139/cjfas-2012-0179

  29. Lidgard DC, Bowen WD, Jonsen ID, Iverson SJ (2012) Animal-borne acoustic transceivers reveal patterns of at-sea associations in an upper-trophic level predator. PLoS ONE 7(11): e48962

  30. Edwards AM, Freeman MP, Breed GA, Jonsen ID (2012) Incorrect likelihood methods were used to infer scaling laws of marine predator search behaviour. PLoS ONE 7(10): e45174

  31. Benoit HP, Hurlburt T, Chasse J, Jonsen ID (2012) Estimating fishery-scale rates of discard mortality using conditional reasoning. Fisheries Research 125:318-330

  32. Breed GA, Costa DP, Jonsen ID, Robinson PW, Mills Flemming JE (2012) State-space methods for more completely capturing behavioural dynamics from animal tracks. Ecological Modelling 235:49-58

  33. Winship AJ, Jorgensen SJ, Shaffer SA, Jonsen ID, Robinson PW, Costa DP, Block BA (2012) State-space framework for estimating measurement error from double-tagging telemetry experiments. Methods In Ecology and Evolution 3:291-302 suppl

  34. Block BA, Jonsen ID, Jorgensen SJ, Winship AJ, Shaffer SA, Bograd SJ, et al (2011) Tracking Apex Marine Predator Movements in a Dynamic Ocean. Nature 475:86-90 suppl

  35. Davies TD, Jonsen ID (2011) Identifying non-proportionality of fishery-independent survey data to estimate population trends and assess recovery potential for cusk (Brosme brosme). Canadian Journal of Fisheries and Aquatic Sciences 68:413-425

  36. Mills Flemming J, Jonsen ID, Myers RA, Field CA (2010) Hierarchical state-space estimation of leatherback turtle navigation ability. PLoS ONE 5(12):e14245

  37. Breed GA, Jonsen ID, Myers RA, Bowen WD, Leonard ML (2009) Sex-specific, seasonal foraging tactics of adult grey seals (Halichoerus grypus) revealed by state-space analysis. Ecology 90:3209-3221 suppl

  38. Swain DP, Jonsen ID, Simon JE, Myers RA (2009) Assessing threats to species at risk using stage-structured state-space models: mortality trends in skate populations. Ecological Applications 19:1347-1364

  39. Calvert AM, Bonner SJ, Jonsen ID, Mills Flemming J, Walde SJ, Taylor PD (2009) A hierarchical Bayesian approach to multi-state mark-recapture: simulations and applications. Journal of Applied Ecology 46:610-620

  40. Jonsen ID, Bourchier RS, Roland J (2007) Effect of matrix habitat on the spread of flea beetle introductions for biological control of Leafy Spurge. Landscape Ecology 22:883-896

  41. Jonsen ID, Bourchier RS, Roland J (2007) Influence of dispersal, stochasticity, and an Allee effect on the persistence of weed biocontrol introductions. Ecological Modelling 203:521-526

  42. Jonsen ID, Myers RA, James MC (2007) Identifying Leatherback Turtle Foraging Behaviour from Satellite Telemetry Using a Switching State-Space Model. Marine Ecology Progress Series 337:255-264

  43. Jonsen ID, RA Myers, MC James (2006) Robust hierarchical state-space models reveal diel variation in travel rates of migrating leatherback turtles. Journal of Animal Ecology 75:1046-1057 suppl

  44. Mills Flemming JE, Field CS, James MC, Jonsen ID, Myers RA (2006) How well can animals navigate? Estimating the circle of confusion from tracking data. Environmetrics 17:351-362

  45. Jonsen ID, Mills Flemming J, Myers RA (2005) Robust state-space modeling of animal movement data. Ecology 86:2874-2880 suppl

  46. Jonsen ID, Myers RA, Mills Flemming J (2003) Meta-analysis of animal movement using state-space models. Ecology 84:3055-2063 suppl

  47. Jonsen ID, Bourchier RS, Roland J (2001) The influence of matrix habitat on Aphthona flea beetle immigration to leafy spurge patches. Oecologia 127:287-294

  48. Jonsen ID, Taylor PD (2000) Calopteryx damselfly dispersions arising from multiscale responses to landscape structure. Conservation Ecology 4(2):4 [online]

  49. Jonsen ID, Taylor PD (2000) Fine-scale movement behaviours of calopterygid damselflies are influenced by landscape structure: an experimental manipulation. Oikos 88:553-562

  50. Fahrig L, Jonsen ID (1998) Effect of habitat patch characteristics on abundance and diversity of insects in an agricultural landscape. Ecosystems 1:197-205

  51. Jonsen ID, Fahrig L (1997) Response of generalist and specialist insect herbivores to landscape spatial structure. Landscape Ecology 12:187-195